Best ERPs for Shopify: Top 8 Picks for 2026
ERP is one of the most misused terms in e-commerce software. According to Sharoon Thomas, co-founder and CEO of Fulfill.io, "ERP is this really strange acronym. It stands for "enterprise resource planning", but it actually could mean anything."
And it does. It gets slapped onto everything from inventory tools to accounting add-ons. For Shopify brands, that confusion creates a real problem because they don't know where to start.
They also aren't sure if they need an ERP, or which one to get. Many of them still run on spreadsheets, disconnected apps, and patchwork workflows far longer than they should, until complexity finally breaks the system.
Multiple sales channels, growing SKU counts, bundles, subscriptions, wholesale, 3PLs, international operations, EDI partners, or in-house manufacturing all introduce operational strain that point tools simply aren’t built to handle.
A real ERP solves that by becoming the system of record for the business. It unifies orders, inventory, fulfillment, accounting, and reporting into one source of truth so teams stop reconciling numbers across tools and start making decisions with reliable data.
For Shopify merchants, this also means something more specific: native integrations with commerce platforms and marketplaces, accurate inventory logic across locations, support for bundles and bills of materials, fast implementations, and software that evolves around how modern e-commerce actually operates.
Today, we'll break down which ERPs are genuinely strong fits for Shopify businesses, and how to evaluate them based on real operational needs rather than marketing labels.
1. Prediko
Prediko is one of the best AI-powered demand planning and supply management platforms for Shopify merchants. Instead of following traditional ERP frameworks, it focuses on forecasting accuracy and inventory decisions—helping brands plan stock better and stay aligned with revenue goals as they scale.
The platform uses AI to generate SKU-level demand forecasts that adjust for seasonality, growth trends, and sales velocity. These forecasts flow directly into supply planning, providing clear guidance on what to buy, when to reorder, and how much inventory to hold across products, bundles, and locations.
Prediko also simplifies purchasing and inventory visibility with real-time purchase order tracking, component and bundle planning, and a clean analytics dashboard that highlights essential inventory KPIs. With deep Shopify ecosystem integrations, it supports multi-store and multi-warehouse operations without the complexity of a traditional ERP.
Key Features & Benefits:
AI-driven demand forecasting at the SKU level with automatic seasonality adjustments
Supply planning that recommends purchase quantities and reorder timing
Purchase order management with real-time supplier visibility
Multi-location inventory management across warehouses and stores
Bundle and component planning using BOM-based inventory relationships
Intuitive dashboards focused on core inventory and stock risk metrics
Integrations with 100+ tools including WMS and 3PL providers
2. Fulfil.io
Fulfil.io takes a different approach by being built exclusively for Shopify Plus and DTC brands. This isn't a retrofitted enterprise system trying to work with ecommerce. The platform handles native integration with 400+ 3PL locations, and implementation happens in weeks rather than months because everything you need for Shopify operations comes standard.
The system excels at handling complex commerce scenarios that break generic ERPs. Split shipments across multiple warehouses, deferred revenue recognition for subscriptions, bundle inventory allocation, and real-time financial reporting all work out of the box. Fulfil includes a fully managed BigQuery data warehouse at no extra cost, letting you query millions of order and inventory records in seconds.
What sets Fulfil apart is the 5-star rating in the Shopify App Store and purpose-built features for modern commerce. The platform manages multi-warehouse inventory with bin-level precision, handles Shopify bundles and pre-orders without spreadsheets, and routes orders across 3PL locations based on inventory and customer location automatically.
Key Strengths:
Purpose-built exclusively for Shopify Plus and DTC brands with native integration
Fixed-price implementation launches in 8-12 weeks versus months for traditional ERPs
Includes fully managed data warehouse with BigQuery for real-time analytics at no extra cost
3. NetSuite ERP
NetSuite ERP handles comprehensive enterprise resource planning for businesses that have outgrown QuickBooks Online or QuickBooks Enterprise. The Shopify ERP integration connects your entire business operation into one unified system. Inventory levels update automatically across all sales channels, customer data flows between platforms without manual CSV exports, and you get enterprise-grade financial reporting without needing a full finance department.
NetSuite tracks stock levels across warehouses, manages lot and serial numbers for compliance, and provides real-time supply chain visibility from supplier to customer. The order management system processes sales orders from multiple channels while routing fulfillment automatically to the most efficient location. Multi-currency transactions, automated tax calculations, and compliance reporting handle international operations across different regulatory environments.
Key Benefits:
Complete ERP solution covering financials, inventory, CRM, and operations in one unified platform
Scales seamlessly from mid sized businesses to enterprise level without platform migration
Strong Shopify integration with automated inventory updates across all sales channels
4. Odoo ERP
Odoo ERP works with modular design where you start with needed features and add more as you grow. The open-source foundation enables extensive customization for unique business operations, though this requires technical expertise or developer support.
The inventory management module tracks stock levels across locations, manages warehouse operations and transfers, and automates reordering based on rules you define. Accounting handles everything from invoicing to financial reporting without separate accounting software. The Shopify integration pulls orders automatically, updates inventory in real-time, and syncs customer data bidirectionally.
Odoo's pricing structure charges per user per month for activated modules only. Need CRM? Turn it on. Want project management? Add that module. The Shopify App Store version handles basic integration, while enterprise versions enable custom integration tailored to complex workflows.
Key Benefits:
Modular pricing structure lets you pay only for features you actually use
Open-source platform allows unlimited customization for unique business processes
Strong inventory tracking with automated reordering and multi-warehouse support
5. Microsoft Dynamics 365 Business Central
Business Central brings Microsoft's ecosystem into Shopify operations. The platform handles financials, supply chain, operations, and customer experience in one system. Inventory management tracks stock levels across locations and provides demand forecasting based on historical sales data. The Shopify integration syncs orders, inventory updates, and customer information.
Business Central excels at financial reporting with real-time cash flow, profit margins, and operational costs visibility. The system tracks every business process from quote to cash, including order management, fulfillment, and invoicing.
Key Benefits:
Seamless integration with Microsoft ecosystem including Office 365 and Power BI
Strong financial reporting capabilities with real-time dashboards and analytics
Scalable platform that grows from small businesses to mid-sized enterprises
6. SAP Business ByDesign
SAP Business ByDesign targets mid-sized businesses needing enterprise capabilities without excessive complexity. The cloud-based ERP solution covers financials, CRM, supply chain, and project management. Inventory tracking provides real-time visibility across global operations, including customs documentation and international shipping.
The demand forecasting uses historical data and seasonality patterns for multi-market inventory prediction. The platform handles multi-currency accounting, local tax compliance, and region-specific business processes. Order processing routes to optimal fulfillment locations based on inventory levels and shipping costs.
Key Benefits:
Built specifically for international operations with multi-currency and multi-language support
Comprehensive supply chain management for complex global operations
Strong analytics and reporting capabilities for data-driven decision making
7. Sage ERP
Sage ERP fills the gap between basic accounting software and full enterprise systems. The inventory management features track stock levels, manage reorder points, and handle multiple warehouse locations. Sage connects with your Shopify store to sync inventory updates, process a sales order, and update financial records automatically.
The system balances features with usability, providing solid financial reporting without overwhelming options. The Shopify integration, available through the Shopify App Store, handles daily operations reliably.
Key Benefits:
Balanced feature set suitable for mid-sized businesses without overwhelming complexity
Affordable pricing compared to enterprise ERP systems like NetSuite or SAP
Quick implementation timeline gets you operational faster than larger platforms
8. Oracle ERP Cloud
Oracle ERP Cloud represents high-end enterprise resource planning for established Shopify Plus merchants with complex operations. The platform covers procurement, project management, risk management, and advanced financial reporting. Inventory management tracks stock levels across unlimited locations with sophisticated demand forecasting using machine learning.
Supply chain management features optimize inventory allocation, automate replenishment, and predict disruptions. Custom integration capabilities connect Oracle with any sales channel or marketplace. The Shopify integration requires development work but handles high transaction volumes and complex workflows.
Key Benefits:
Enterprise-scale platform handles unlimited complexity and transaction volumes
Advanced AI and machine learning for demand forecasting and optimization
Comprehensive business operations management from procurement to customer service
What to Look for in a Shopify ERP
The way we see it, there are five things you should pay special attention to when it comes to ERPs.
Real-time inventory management is non-negotiable.
The best ERP systems sync across all channels instantly, not five minutes after a sale happens. You need accurate stock levels that update when a customer checks out on your Shopify store, Amazon, or any other sales channel you're using.
In addition to that, look for solutions that present data clearly without requiring an accounting degree to interpret. Your ERP solution should show you cash flow, profit margins, and expenses in dashboards you can actually understand and act on quickly.
We can’t forget integrations, either. Your ERP software should connect with your Shopify store, accounting software, and payment processors without custom coding that breaks with every update. Growing businesses need systems that work together, not platforms that create more manual work for the web development team.
On top of that, supply chain and inventory tracking must handle multiple stock levels and warehouse locations. Look for accurate demand forecasting based on historical trends and seasonality, plus supply chain management that handles business processes from purchase order to fulfillment without constant supervision.
Finally, you want customer satisfaction to remain high. Therefore, customer relationship management features should track customer data and customer information across every touchpoint, supporting your lead generation and sales efforts.. You need to see the complete picture from initial browse to repeat purchase, including order history, preferences, and communication records all in one place.
How to Choose the Right ERP for Your Shopify Store
Once you got all that down, here’s how you make the final choice:
Match the ERP solution to your current needs, not future dreams.
Don't buy an enterprise ERP system because you think you'll need it in three years. Growing businesses waste money on features they won't use. Focus on what you need today plus reasonable growth over the next 18 months.Test the actual Shopify integration quality, not just whether it exists.
Some systems require custom integration that costs thousands in development and maintenance. Others offer pre-built connectors through the Shopify App Store. An integration that syncs inventory updates hourly is useless when you need real-time stock levels for accurate customer expectations.Consider your existing technology stack carefully.
If you're using QuickBooks Online for accounting, find an ERP that integrates smoothly or replaces it entirely. Look at your current accounting software, CRM system, and other business tools. The best ERP works with what you already have instead of forcing complete replacement.Evaluate your team's technical capability honestly.
Complex ERP systems require training and dedicated administrators. Simpler platforms get your team productive faster but might limit future capabilities. Balance sophistication with usability based on who will actually use the system every day.Calculate total cost of ownership beyond monthly fees.
Factor in ERP implementation costs, training time, ongoing maintenance, and required customization. A cheaper system that needs constant manual intervention costs more than an expensive platform that runs automatically. Include costs for the ERP vendor support, updates, and any consulting needed.
Conclusion
While we ranked our picks on this list, you do need to realize that there's no universally best ERP for Shopify.
We've seen Prediko transform inventory operations for fashion brands, NetSuite handle complex international operations for enterprise clients, and Sage deliver solid results for mid-market merchants. Choose based on your specific needs, not features lists.
And if you need any additional expert help, don’t hesitate to contact the Nine!